Accounting Apps for Shopify
Browse verified Accounting tools designed to help Shopify merchants optimize operations, increase conversions, and enhance customer experience.
Data Export IO: Report
Estore Automate
Instantly access reports to analyze any store data: sales, inventory, shipping, fulfillment, payouts, tax, customers, refunds and more. Build custom reports with meta fields, line item properties, note attributes and any field from your store API. Add calculations and formulas for unique data fields. Save, edit and rerun unlimited reports. Automate everything by scheduling reports in the format and destination you choose. Short on time? We are one click away from setting up your reports for you.
A2X – QuickBooks (QBO) & Xero
A2X Software Limited
A2X makes reconciling your Shopify payout data in QuickBooks Online (QBO), Xero, Sage, or NetSuite a breeze. Every Shopify transaction – sales, fees, taxes, refunds, gift cards, and more – is categorized into accurate summaries that reconcile perfectly with deposits in your accounting software. Leading merchants, accountants, and bookkeepers trust A2X to save hours on their bookkeeping, accurately track their taxes & COGS, increase the quality of their P&L, and gain true financial visibility.
KashFlow Connector by CTO
CarryTheOne
Multiple Stores? No problem. Connect multiple Shopify stores to a single KashFlow organisation. This integration - the original, longest running and time-tested Shopify-KashFlow connector - was developed with a special emphasis on correct tax handling and offers Full, Comprehensive Tax Support - US and Canada Sales Tax (including County/Municipal/Provincial Tax), Australian & New Zealand GST, UK & European VAT, etc. As your sales volumes increase you will benefit from a streamlined process.
Twinfield
Webwinkelfacturen
This app connects your Shopify webshop to your Twinfield administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Twinfield. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Twinfield. All details can be found in an online dedicated manual.
Informer
Webwinkelfacturen
This app connects your Shopify webshop to your Informer administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Informer. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Informer. All details can be found in an online dedicated manual.
Metriks Profit Dashboard
ViSoft Solutions B.V.
Are you still using Excel to calculate your store's profits?! Introducing Metriks, a platform providing store owners a compact overview of their webshops' performance. Metriks helps store owners by taking away the manual work and automating their financial overviews.
EXPORT OrderPro: Order reports
Menelabs O.E.
EXPORT OrderPro takes data from your store's daily sales and generates order reports easily customized to fit your business process. Choose from more than 100 different data fields and use the simple drag-and-drop interface to organize your columns neatly. Export your reports in standard file formats or automatically schedule them for your suppliers.
FreshBooks Link by CarryTheOne
CarryTheOne
Connect Shopify to FreshBooks and keep your accounts up to date automatically. Import orders as invoices, create or match customers, apply payments, handle refunds/returns as credit notes, and support discounts, gift certificates, multi-currency and worldwide tax including US/Canada sales tax, GST and VAT. Connect multiple Shopify stores to one FreshBooks account.
Bookkeep Accounting+Inventory
bookkeep.com Inc.
With Bookkeep, close your books accurately and on-time with daily summary journal entries, fulfillment-based revenue recognition and order-to-cash reconciliation. Direct posting into QuickBooks Online, Intuit Enterprise Suite, NetSuite, Sage Intacct, Xero and more. Automatically file and pay your sales tax with a dedicated team of tax experts. Manage your purchase orders and receiving with Bookkeep Inventory (Stocky replacement). All managed through our embedded app in your Shopify admin!
QuickBooks Desktop by Parex
Parex Technologies Pvt Ltd
Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods.
Lexware Office (lexoffice)
Eshop Guide
(formerly lexoffice) Key Features: Automatically create invoices & credit notes for your orders & send them to customers by email, Synchronize payment data (Paypal, Klarna, Amazon, Sofortkauf, Apple Pay, credit card, Samsung Pay, Shopify Payments, TikTok) and transaction fees, Post OSS-relevant receipts, VAT exemptions, Automatically update invoices, Exclude documents via tags & order source, Import past orders, Individual invoice layouts, POS, e-invoices and more...
Xero & QuickBooks Smart Sync
MicroAngel
Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts.
e‑Boekhouden.nl
Webwinkelfacturen
This app connects your Shopify webshop to your e-Boekhouden.nl administration. That’s why you don’t have to type out data, the orders are transferred automatically to e-Boekhouden.nl. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created or (partially) paid. The correct price-details (e.g. order details) and customer-details are transferred to e-Boekhouden.nl. All details can be found at www.webwinkelfacturen.nl/handleiding-shopify-eboekhouden.
Exact Online
Webwinkelfacturen
Deze app verbindt je Shopify webwinkel met je Exact Online administratie. Hierdoor hoef je niet meer handmatig gegevens over te tikken, aangezien de bestellingen automatisch worden doorgezet naar Exact Online. Dit is een real-time koppeling. Je geeft zelf aan wanneer een bestelling doorgezet mag worden: Als de bestelling (deels) betaald of geautoriseerd is. De correcte verkoopgegevens (bestelnummer/besteldatum) en klantgegevens worden hierna doorgezet naar Exact Online.
Snelstart
Webwinkelfacturen
This app connects your Shopify webshop to your Snelstart administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Snelstart. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Snelstart. All details are available in a dedicated online manual.
Connex Ecommerce
Connex Ecommerce
Connex helps ecommerce and wholesale businesses automate workflows between Shopify, accounting systems, ERP platforms, inventory tools, and fulfillment providers. The app reduces manual data entry by syncing orders, inventory, customers, payouts, shipping updates, and accounting data across connected systems. Connex supports custom workflow rules and operational processes for businesses managing multiple sales channels, high order volume, or complex accounting requirements.
Moneybird
Webwinkelfacturen
Deze app verbindt je Shopify webwinkel met je Moneybird administratie. Hierdoor hoef je niet meer handmatig gegevens over te tikken, aangezien de bestellingen automatisch worden doorgezet naar Moneybird. Dit is een real-time koppeling. Je geeft zelf aan wanneer een bestelling doorgezet mag worden: Als de bestelling (deels) betaald of geautoriseerd is. De correcte verkoopgegevens (bestelnummer/besteldatum) en klantgegevens worden hierna doorgezet naar Moneybird.
bexioSync by BedayaConnect
Bedaya GmbH
Keep Shopify synchronized with bexio! bexioSync enables you to synchronize your Shopify customers, products, and orders with bexio. bexioSync removes the need for hours of manual work by providing you with a solution to automatically sync your Shopify store data with bexio.
Billit
Webwinkelfacturen
This app connects your Shopify webshop to your Billit administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Billit. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Billit. A detailed online manual is available.
Yuki
Webwinkelfacturen
This app connects your Shopify webshop to your Yuki administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Yuki. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Yuki. A detailed online manual is available.
MUIS
Webwinkelfacturen
This app connects your Shopify webshop to your MUIS administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to MUIS. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to MUIS. All details can be found in an online dedicated manual.
Silvasoft
Webwinkelfacturen
This app connects your Shopify webshop to your Silvasoft administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Silvasoft. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Silvasoft. All details can be found in an online dedicated manual.
Reeleezee
Webwinkelfacturen
This app connects your Shopify webshop to your Reeleezee administration. That’s why you don’t have to manually type out data, the orders are transferred automatically to Reeleezee. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Reeleezee. All details can be found at https://www.webwinkelfacturen.nl/handleiding-shopify-reeleezee.
Payments & Refunds PDF Report
Kalis Media
Calculate taxes on custom refunds. Lets say a customer complains about a product, you let the customer keep the product and grant them a refund that is less than 100% of its price. If you refund 50% of the product price, Shopify does not calculate taxes on the refund. This app does. Daily, weekly or monthly PDF reports can be automatically emailed to you. The app supports only shops with only one tax setting. If you ship to different tax zones, the calculated tax will not be correct.
PIE VAT ‑ Tax Free Shopping
Pie Systems
#PIE VAT ##NOTE: You must have an account with Pie VAT before you can use this app. To do so, please contact us! Pie VAT is a digital VAT refund (tax free shopping) platform. We help merchants and tourists facilitate their VAT refunds for purchases made. For stores, we empower them with a digital platform to drive more tourist sales. For tourists, the PIE VAT mobile app enables a hassle-free VAT refund with higher refunds and happier tourists.
Exact Online by iWeb
iWebDevelopment
Orders overtypen in Exact Online kost tijd en gaat vroeg of laat mis. Deze koppeling stuurt elke Shopify-order, klant en artikel automatisch door naar Exact Online, zodat je administratie bijblijft zonder dat je er naar omkijkt. Je stelt zelf in bij welke orderstatus een order wordt doorgezet en of daar een verkoopfactuur, verkooporder of verkoopboeking van wordt gemaakt. Voorraad uit Exact Online werkt je webshop automatisch bij. In het controlepaneel zie je per order wat er is uitgewisseld.